multisage

Worm SAGE Project

MultiSAGE: Caenorhabditis elegans

News and Updates
Last updated September 18, 2007

LIBRARIES AND TAG FILTERING CRITERIA

	Remove duplicate ditags
	Keep unmatched tags
	Resolve to lowest position
	Hide ambiguous tags
	Hide antisense tags
Tags/page

	Min. tag count
	Max. tag count
	Normalization
	Tag count order
	Seq. quality filter
	Output

Graphs: plot log2

Exclude

TAG MAPPING OPTIONS (WS170)

Coding RNA

EST

Other RNA

OST

Mitochondrial

Genome

WS140 Mappings WS150 Mappings WS160 Mappings WS180 Mappings WS190 Mappings

Developmental series
Embryonic series
All longSAGE data metalibrary
FACS sorted AFD neurons
FACS sorted ASER neurons
FACS sorted ciliated neurons
FACS sorted gut cells
FACS sorted hypodermal cells
FACS sorted muscle cells (replicate 1)
FACS sorted muscle cells (replicate 2)
FACS sorted pan-neural cells (replicate 1)
FACS sorted pharyngeal gland cells
FACS sorted pharyngeal marginal cells
FACS sorted pharynx cells
FACS sorted punc-4::GFP cells
Illumina L1 starved, replicate 1
Illumina L1 starved, replicate 2
Illumina L1 starved, replicate 3
Illumina L1, replicate 1
Illumina L1, replicate 2
Illumina L1, replicate 3
Illumina L2, replicate 1
Illumina L2, replicate 2
Illumina L2D, replicate 1
Illumina L2D, replicate 2
Illumina L2D, replicate 3
Illumina L3, replicate 1
Illumina L3, replicate 3
Illumina N2 Dauer
Illumina N2 Dauer replicate 2
Illumina N2 Young Adults liquid culture
Illumina daf-2;fer-15 1 day, liquid culture
Illumina daf-2;fer-15 1 day, plated
Illumina daf-2;fer-15 10 day, liquid culture
Illumina daf-2;fer-15 10 day, plated
Illumina daf-2;fer-15 6 day, liquid culture
Illumina daf-2;fer-15 6 day, plated
Illumina fer-15 1 day, liquid culture
Illumina fer-15 1 day, plated
Illumina fer-15 6 day, liquid culture
Illumina fer-15 6 day, plated
Illumina two week-old dauer larvae
N2 Embryos
N2 Embryos (longSAGE)
N2 L1 Larvae
N2 L2 Larvae
N2 L3 Larvae
N2 L4 Larvae
N2 Young Adults
dissected gonad
fer-15 1 day
fer-15 6 day
fer-15; daf-2 1 day
fer-15; daf-2 10 days
fer-15; daf-2 6 days
glp-4 adults
glp-4 dissected gut
mixed stage (no qual.)
mixed stage (with qual.)
purified oocytes
two week-old dauer larvae
young dauer larvae (no qual.)
young dauer larvae (with qual.)